Multimodal regularised linear models with flux balance analysis for mechanistic integration of omics data

Motivation: High-throughput biological data, thanks to technological advances, have become cheaper to collect, leading to the availability of vast amounts of omic data of different types. In parallel, the in silico reconstruction and modeling of metabolic systems is now acknowledged as a key tool to complement experimental data on a large scale. The integration of these model- and data-driven information is therefore emerging as a new challenge in systems biology, with no clear guidance on how to better take advantage of the inherent multisource and multiomic nature of these data types while preserving mechanistic interpretation. Results: Here, we investigate different regularization techniques for high-dimensional data derived from the integration of gene expression profiles with metabolic flux data, extracted from strain-specific metabolic models, to improve cellular growth rate predictions. To this end, we propose ad-hoc extensions of previous regularization frameworks including group, view-specific and principal component regularization and experimentally compare them using data from 1143 Saccharomyces cerevisiae strains. We observe a divergence between methods in terms of regression accuracy and integration effectiveness based on the type of regularization employed. In multiomic regression tasks, when learning from experimental and model-generated omic data, our results demonstrate the competitiveness and ease of interpretation of multimodal regularized linear models compared to data-hungry methods based on neural networks. Availability and implementation: All data, models and code produced in this work are available on GitHub at https://github.com/Angione-Lab/HybridGroupIPFLasso_pc2Lasso. Supplementary information: Supplementary data are available at Bioinformatics online

Point-of-Care test screening versus Case finding for paediatric coeliac disease: A pragmatic study in primary care

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A point-of-care test for facing the burden of undiagnosed celiac disease in the Mediterranean area: a pragmatic design study

BACKGROUND: We aimed at assessing the factors that can influence results of the dissemination of an already validated, new generation commercial Point-of-Care Test (POCT) for detecting celiac disease (CD), in the Mediterranean area, when used in settings where it was designed to be administered, especially in countries with poor resources. METHODS: Pragmatic study design. Family pediatricians at their offices in Italy, nurses and pediatricians in Slovenia and Turkey at pediatricians', schools and university primary care centers looked for CD in 3,559 (1-14 yrs), 1,480 (14-23 yrs) and 771 (1-18 yrs) asymptomatic subjects, respectively. A new generation POCT detecting IgA-tissue antitransglutaminase antibodies and IgA deficiency in a finger-tip blood drop was used. Subjects who tested positive and those suspected of having CD were referred to a Celiac Centre to undergo further investigations in order to confirm CD diagnosis. POCT Positive Predictive Value (PPV) at tertiary care (with Negative Predictive Value) and in primary care settings, and POCT and CD rates per thousand in primary care were estimated. RESULTS: At tertiary care setting, PPV of the POCT and 95% CI were 89.5 (81.3-94.3) and 90 (56-98.5) with Negative Predictive Value 98.5 (94.2-99.6) and 98.7% (92-99.8) in children and adults, respectively. In primary care settings of different countries where POCT was performed by a different number of personnel, PPV ranged from 16 to 33% and the CD and POCT rates per thousand ranged from 4.77 to 1.3 and from 31.18 to 2.59, respectively. CONCLUSIONS: Interpretation of POCT results by different personnel may influence the performance of POC but dissemination of POCT is an urgent priority to be implemented among people of countries with limited resources, such as rural populations and school children

A Probe into the Reform of Public Calligraphy Course in Chinese Colleges and Universities

中国书法是中国传统文化中的瑰宝，它既是一门艺术，又有着深厚的文化内涵。我国普通高校开设公共书法教学是与目前倡导的素质教育，培养创新型人才，提倡人的全面和谐发展的高等教育理念相一致的。加强高校公共书法教育，是全面推进素质教育的有效途径之一，也是提高当代大学生人文素质的重要手段。它对促进大学生人格完善、创造力培养以及民族文化的传承等有着不可低估的作用。本文主要针对我国普通高等院校公共书法教学现状进行分析，并由此比较借鉴日本高校中实施书法教学的成功经验提出对我国高校公共书法教学改革的具体建议和措施，设计并实践一种具备学科视野的、以学生为主体的公共书法教学的新模式。论文共分为五部分。引言扼要介绍论文写...Chinese calligraphy is a treasure of Chinese traditional culture. It not only is an art, but also has profound culture contents. Opening the public calligraphy course to the university students is in accordance with the concept that advocated by the current quality- oriented education, which aims to cultivate the students’ creative talent and comprehensive development. This paper concentrates on a...学位：文学硕士院系专业：艺术教育学院美术系_美术学学号：20042201

The GAPS Programme at TNG. XXVIII. A pair of hot-Neptunes orbiting the young star TOI-942

Context. Young stars and multi-planet systems are two types of primary objects that allow us to study, understand, and constrain planetary formation and evolution theories. Aims: We validate the physical nature of two Neptune-sized planets transiting TOI-942 (TYC 5909-319-1), a previously unacknowledged young star (50-20+30 Myr) observed by the TESS space mission in Sector 5. Methods: Thanks to a comprehensive stellar characterization, TESS light curve modeling and precise radial-velocity measurements, we validated the planetary nature of the TESS candidate and detected an additional transiting planet in the system on a larger orbit. Results: From photometric and spectroscopic observations we performed an exhaustive stellar characterization and derived the main stellar parameters. TOI-942 is a relatively active K2.5V star (log R'HK = -4.17 ± 0.01) with rotation period Prot = 3.39 ± 0.01 days, a projected rotation velocity v sin i⋆ = 13.8 ± 0.5 km s-1, and a radius of ~0.9 R⊙. We found that the inner planet, TOI-942 b, has an orbital period Pb = 4.3263 ± 0.0011 days, a radius Rb = 4.242-0.313+0.376 R⊕, and a mass upper limit of 16 M⊕ at 1σ confidence level. The outer planet, TOI-942 c, has an orbital period Pc = 10.1605-0.0053+0.0056 days, a radius Rc = 4.793-0.351+0.410 R⊕, and a mass upper limit of 37 M⊕ at 1σ confidence level. Based on observations made with the Italian Telescopio Nazionale Galileo (TNG) operated by the Fundación Galileo Galilei (FGG) of the Istituto Nazionale di Astrofisica (INAF) at the Observatorio del Roque de los Muchachos (La Palma, Canary Islands, Spain). The authors became aware of a parallel effort on the characterization of TOI-942 by Zhou et al. (2021) in the late stages of the manuscript preparations. The submissions are coordinated, and no analyses or results were shared prior to submission

CMS physics technical design report : Addendum on high density QCD with heavy ions

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